Publications | Genomics Labhttps://genomicslabesalq.github.io/publication/PublicationsHugo Blox Builder (https://hugoblox.com)en-usWed, 05 Nov 2025 00:00:00 +0000https://genomicslabesalq.github.io/media/logo_hu_cf4689c325777f3a.pngPublicationshttps://genomicslabesalq.github.io/publication/Chromosome-level comparative genomics and host-specific fungal transcriptomics uncover adaptive virulence strategies in the sugarcane smut pathogenhttps://genomicslabesalq.github.io/publication/vilanova_2025/Wed, 05 Nov 2025 00:00:00 +0000https://genomicslabesalq.github.io/publication/vilanova_2025/Multilayered Defense Responses in Sugarcane Against Pratylenchus zeae Revealed by Comparative Transcriptomicshttps://genomicslabesalq.github.io/publication/confort_multilayered_2025/Sat, 30 Aug 2025 00:00:00 +0000https://genomicslabesalq.github.io/publication/confort_multilayered_2025/Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infectionhttps://genomicslabesalq.github.io/publication/husein_2025_1/Tue, 08 Jul 2025 00:00:00 +0000https://genomicslabesalq.github.io/publication/husein_2025_1/Updated chromosome-level genome assembly of Sporisorium scitamineum with improved accuracy and completenesshttps://genomicslabesalq.github.io/publication/taniguti_2025/Tue, 27 May 2025 00:00:00 +0000https://genomicslabesalq.github.io/publication/taniguti_2025/Transcriptome Profiling of Resistance Genes Analogs in Soybean’s Cross-Tolerance to Water Limitation and Rust Stresshttps://genomicslabesalq.github.io/publication/husein_20252/Fri, 23 May 2025 00:00:00 +0000https://genomicslabesalq.github.io/publication/husein_20252/Exploring Potential Surrogate Systems for Studying the Early Steps of the Sporisorium scitamineum Pathogenesishttps://genomicslabesalq.github.io/publication/marrafon_2024/Sat, 01 Jun 2024 00:00:00 +0000https://genomicslabesalq.github.io/publication/marrafon_2024/First investigation into the genetic control of meiosis in sugarcanehttps://genomicslabesalq.github.io/publication/reis_soares_2024/Sat, 01 Jun 2024 00:00:00 +0000https://genomicslabesalq.github.io/publication/reis_soares_2024/CRISPR technology towards genome editing of the perennial and semi-perennial crops citrus, coffee and sugarcanehttps://genomicslabesalq.github.io/publication/prado_2024/Mon, 08 Jan 2024 00:00:00 +0000https://genomicslabesalq.github.io/publication/prado_2024/Water Limitation Causes Early-Stage Metabolic Perturbation in the Interaction of Soybean and the Causal Agent of Asian Soybean Rusthttps://genomicslabesalq.github.io/publication/castro-moretti_water_2024/Mon, 01 Jan 2024 00:00:00 +0000https://genomicslabesalq.github.io/publication/castro-moretti_water_2024/Transmission of Xanthomonas albilineans by the spittlebug, Mahanarva fimbriolata (Hemiptera: Cercopidae), in Brazil: first report of an insect vector for the causal agent of sugarcane leaf scaldhttps://genomicslabesalq.github.io/publication/bini_transmission_2023/Wed, 01 Nov 2023 00:00:00 +0000https://genomicslabesalq.github.io/publication/bini_transmission_2023/Molecular, biochemical and metabolomics analyses reveal constitutive and pathogen-induced defense responses of two sugarcane contrasting genotypes against leaf scald diseasehttps://genomicslabesalq.github.io/publication/bini_molecular_2023/Sun, 01 Jan 2023 00:00:00 +0000https://genomicslabesalq.github.io/publication/bini_molecular_2023/A Bacterial Type Three Secretion-Based Delivery System for Functional Characterization of Sporisorium scitamineum Plant Immune Suppressing Effector Proteinshttps://genomicslabesalq.github.io/publication/maia_2022/Fri, 01 Jul 2022 00:00:00 +0000https://genomicslabesalq.github.io/publication/maia_2022/A genome sequence resource for the genus Passiflora , the genome of the wild diploid species Passiflora organensishttps://genomicslabesalq.github.io/publication/costa_2021/Mon, 01 Nov 2021 00:00:00 +0000https://genomicslabesalq.github.io/publication/costa_2021/Arabidopsis-Based Dual-Layered Biological Network Analysis Elucidates Fully Modulated Pathways Related to Sugarcane Resistance on Biotrophic Pathogen Infectionhttps://genomicslabesalq.github.io/publication/rody_2021/Thu, 19 Aug 2021 00:00:00 +0000https://genomicslabesalq.github.io/publication/rody_2021/Complete Chromosome-Scale Genome Sequence Resource for Sporisorium panici-leucophaei , the Causal Agent of Sourgrass Smut Diseasehttps://genomicslabesalq.github.io/publication/crestana_2021/Thu, 01 Apr 2021 00:00:00 +0000https://genomicslabesalq.github.io/publication/crestana_2021/Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomeshttps://genomicslabesalq.github.io/publication/de_almeida2021/Thu, 11 Mar 2021 00:00:00 +0000https://genomicslabesalq.github.io/publication/de_almeida2021/Leaping into the Unknown World of Sporisorium scitamineum Candidate Effectorshttps://genomicslabesalq.github.io/publication/teixeira-silva_2020/Fri, 04 Dec 2020 00:00:00 +0000https://genomicslabesalq.github.io/publication/teixeira-silva_2020/Differential responses of genes and enzymes associated with ROS protective responses in the sugarcane smut fungushttps://genomicslabesalq.github.io/publication/peters_2020/Tue, 01 Dec 2020 00:00:00 +0000https://genomicslabesalq.github.io/publication/peters_2020/Multiple resistance of Plasmopara viticola to QoI and CAA fungicides in Brazilhttps://genomicslabesalq.github.io/publication/santos_2020/Tue, 01 Dec 2020 00:00:00 +0000https://genomicslabesalq.github.io/publication/santos_2020/Time-series expression profiling of sugarcane leaves infected with Puccinia kuehnii reveals an ineffective defense system leading to susceptibilityhttps://genomicslabesalq.github.io/publication/correr_timeseries_2020/Wed, 01 Jul 2020 00:00:00 +0000https://genomicslabesalq.github.io/publication/correr_timeseries_2020/Characterization of genes responsive to osmotic and oxidative stresses of the sugarcane bacterial pathogen Leifsonia xyli subsp. xylihttps://genomicslabesalq.github.io/publication/faria_2020/Sun, 01 Mar 2020 00:00:00 +0000https://genomicslabesalq.github.io/publication/faria_2020/Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossumhttps://genomicslabesalq.github.io/publication/dos_santos_2019/Sun, 01 Dec 2019 00:00:00 +0000https://genomicslabesalq.github.io/publication/dos_santos_2019/Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant genotypehttps://genomicslabesalq.github.io/publication/rody_2019/Sun, 01 Dec 2019 00:00:00 +0000https://genomicslabesalq.github.io/publication/rody_2019/Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogenhttps://genomicslabesalq.github.io/publication/bedre_genome-wide_2019/Thu, 20 Jun 2019 00:00:00 +0000https://genomicslabesalq.github.io/publication/bedre_genome-wide_2019/Assessing early resistance responses of sugarcane to Xanthomonas albilineanshttps://genomicslabesalq.github.io/publication/monteirovitorello_20191/Tue, 01 Jan 2019 00:00:00 +0000https://genomicslabesalq.github.io/publication/monteirovitorello_20191/Proteome characterization of the cell wall, apoplast and extracellular space of sugarcane infected with Sporisorium scitamineum, the causal agent of smut diseasehttps://genomicslabesalq.github.io/publication/monteirovitorello_20192/Tue, 01 Jan 2019 00:00:00 +0000https://genomicslabesalq.github.io/publication/monteirovitorello_20192/Novel Insights Into the Early Stages of Ratoon Stunting Disease of Sugarcane Inferred from Transcript and Protein Analysishttps://genomicslabesalq.github.io/publication/cia_2018/Sat, 01 Dec 2018 00:00:00 +0000https://genomicslabesalq.github.io/publication/cia_2018/Revisiting Meiosis in Sugarcane: Chromosomal Irregularities and the Prevalence of Bivalent Configurationshttps://genomicslabesalq.github.io/publication/vieira_2018/Thu, 14 Jun 2018 00:00:00 +0000https://genomicslabesalq.github.io/publication/vieira_2018/Comparative Genomics of Smut Pathogens: Insights From Orphans and Positively Selected Genes Into Host Specializationhttps://genomicslabesalq.github.io/publication/benevenuto_comparative_2018/Fri, 06 Apr 2018 00:00:00 +0000https://genomicslabesalq.github.io/publication/benevenuto_comparative_2018/Progress in understanding fungal diseases affecting sugarcane: smuthttps://genomicslabesalq.github.io/publication/university_2018/Mon, 05 Mar 2018 00:00:00 +0000https://genomicslabesalq.github.io/publication/university_2018/Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emissionhttps://genomicslabesalq.github.io/publication/schaker_2017/Wed, 31 May 2017 00:00:00 +0000https://genomicslabesalq.github.io/publication/schaker_2017/Functional analysis of oxidative burst in sugarcane smut-resistant and -susceptible genotypeshttps://genomicslabesalq.github.io/publication/peters_2017/Sat, 01 Apr 2017 00:00:00 +0000https://genomicslabesalq.github.io/publication/peters_2017/Genome-wide characterization of alternative splicing patterns in sugarcane modulated during infection with smut pathogen, Sporisorium scitamineumhttps://genomicslabesalq.github.io/publication/monteirovitorell0_2017/Sun, 01 Jan 2017 00:00:00 +0000https://genomicslabesalq.github.io/publication/monteirovitorell0_2017/Molecular variability and genetic relationship among Brazilian strains of the sugarcane smut fungushttps://genomicslabesalq.github.io/publication/benevenuto_molecular_2016/Thu, 01 Dec 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/benevenuto_molecular_2016/Sporisorium scitamineum colonisation of sugarcane genotypes susceptible and resistant to smut revealed by GFPhttps://genomicslabesalq.github.io/publication/carvalho_sporisorium_2016/Tue, 01 Nov 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/carvalho_sporisorium_2016/RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Diseasehttps://genomicslabesalq.github.io/publication/schaker_2016/Thu, 01 Sep 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/schaker_2016/Sugarcane smut: shedding light on the development of the whip-shaped sorushttps://genomicslabesalq.github.io/publication/marques_2016/Sat, 27 Aug 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/marques_2016/Development of a qPCR for Leifsonia xyli subsp. xyli and quantification of the effects of heat treatment of sugarcane cuttings on Lxxhttps://genomicslabesalq.github.io/publication/carvalho_development_2016/Mon, 01 Feb 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/carvalho_development_2016/A stable Leifsonia xyli subsp. xyli GFP tagged strain reveals a new colonization niche in sugarcane tissueshttps://genomicslabesalq.github.io/publication/quecine_2016/Fri, 01 Jan 2016 00:00:00 +0000https://genomicslabesalq.github.io/publication/quecine_2016/Analysis of plant gene expression during passion fruit Xanthomonas axonopodis interaction implicates lipoxygenase 2 in host defencehttps://genomicslabesalq.github.io/publication/munhoz_2015/Wed, 01 Jul 2015 00:00:00 +0000https://genomicslabesalq.github.io/publication/munhoz_2015/Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcanehttps://genomicslabesalq.github.io/publication/taniguti_2015/Fri, 12 Jun 2015 00:00:00 +0000https://genomicslabesalq.github.io/publication/taniguti_2015/